PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G325100.2
Common NamePHAVU_002G325100g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 368aa    MW: 39550.1 Da    PI: 8.5704
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G325100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000883659123
                        EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                        +kC+ C+k  s+ s +  H    H
  Phvul.002G325100.2 36 FKCHVCHKKLSTASGMAIHVLQvH 59
                        89***************9987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5080812.345766IPR003656Zinc finger, BED-type
SMARTSM00355201235IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801435IPR007087Zinc finger, C2H2
SMARTSM003550.13659IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803859IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGKKKKRVSS KVWCYYCDRE FDDEKILVQH QKAKHFKCHV CHKKLSTASG MAIHVLQVHK  60
ESVTKVPNAK PGRESTDIEI YGMQGIPPDI LAAHYGEEDD DVPSKAAKVD ISQSQLVGGM  120
RPPPLGTGYP PRSVLPTLPP VYNPAVPLPP NAWVVPPRQP WFSQPPAVSV PPPAPYTQQP  180
LFPLQNVRPP MPATAPAAMQ TQIAPPGLLT SAPVPVSQPL FPVVGNNHTT TQSSYSAPPL  240
PSSVPSVTPV MSANVPVDTH LSTHSSVTNS YQAIGVPASN SHSYASGPNT GGPSIGPPPV  300
IANKAPASQP ATNEVYLVWD DEAMSMEERR MSLPKYQVHD ESSQMSSIDA AIDKRILESR  360
LAGRMAF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-174AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160474.10.0hypothetical protein PHAVU_002G325100g
SwissprotQ9C5G01e-149SUF4_ARATH; Protein SUPPRESSOR OF FRI 4
TrEMBLV7CSX50.0V7CSX5_PHAVU; Uncharacterized protein
STRINGGLYMA05G34280.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30970.11e-132C2H2 family protein